ProteInfer

Predicting the functional properties of protein sequences using deep neural networks.

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Important

This file type requires the parsomics-plugin-proteinfer plugin

File naming

The file names must adhere to one of the following patterns:

• <MAG-name>_ProteInfer_out.tsv,
• <MAG-name>.tsv,

File format

The file must include a header (i.e. it should include column names at the top). It must have the following columns:

Column name	Column obligatoriness	Data type	Data nullability
sequence_name	Mandatory	String	Not nullable
predicted_label	Mandatory	String	Nullable
confidence	Mandatory	String	Nullable
description	Optional	String	Nullable

Mapping to database

ProteinAnnotationFile

Original data	ProteinAnnotationFile field
ProteInfer TSV file path	path

ProteinAnnotationEntry

Original data	ProteinAnnotationEntry field
sequence_name	protein_key 1
predicted_label	accession and annotation_type 2
confidence	score
description	description

Footnotes

1. The protein name in the ProteInfer TSV file name is used to query the primary key of the corresponding protein in the database ↩

2. The predicted_label column in the ProteInfer TSV files is formatted like so: <Annotation-type>:<Accession>. One such example would be Pfam:CL0023, in which case this plugin would set annotation_type to "PFAM" and accession to "CL0023". ↩